{
  "_id": "6a101ddcacfb0bcc41c8a6fd",
  "Package": "neurobase",
  "Type": "Package",
  "Title": "'Neuroconductor' Base Package with Helper Functions for 'nifti'\nObjects",
  "Version": "1.34.0",
  "Authors@R": "person(given = \"John\",\nfamily = \"Muschelli\",\nrole = c(\"aut\", \"cre\"),\nemail = \"muschellij2@gmail.com\")",
  "Maintainer": "John Muschelli <muschellij2@gmail.com>",
  "Description": "Base package for 'Neuroconductor', which includes many\nhelper functions that interact with objects of class 'nifti',\nimplemented by package 'oro.nifti', for reading/writing and\nalso other manipulation functions.",
  "License": "GPL-2",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/muschellij2/neurobase/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "Repository": "https://muschellij2.r-universe.dev",
  "Date/Publication": "2025-10-16 15:40:52 UTC",
  "RemoteUrl": "https://github.com/muschellij2/neurobase",
  "RemoteRef": "HEAD",
  "RemoteSha": "27f97bb6e83aa856698dfae924e359ff7e40734d",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-14 07:44:22 UTC",
    "User": "root"
  },
  "Author": "John Muschelli [aut, cre]",
  "MD5sum": "99b9f77344546c22702f5ce558e9647b",
  "_user": "muschellij2",
  "_type": "src",
  "_file": "neurobase_1.34.0.tar.gz",
  "_fileid": "59ac6b8eb471cff6bd7251e16b297a71329b48c25822e91be323422a2430c9e0",
  "_filesize": 2757983,
  "_sha256": "59ac6b8eb471cff6bd7251e16b297a71329b48c25822e91be323422a2430c9e0",
  "_created": "2026-05-14T07:44:22.000Z",
  "_published": "2026-05-22T09:11:56.974Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77350196683,
      "time": 143,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6989682483"
    },
    {
      "job": 77350197153,
      "time": 142,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6989682103"
    },
    {
      "job": 77350197092,
      "time": 101,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6989671759"
    },
    {
      "job": 77350196827,
      "time": 105,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6989672769"
    },
    {
      "job": 77350196608,
      "time": 282,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6989646311"
    },
    {
      "job": 77350196298,
      "time": 119,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156951031"
    },
    {
      "job": 77350196821,
      "time": 98,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6989671442"
    },
    {
      "job": 77350196788,
      "time": 95,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6989674330"
    },
    {
      "job": 77350196639,
      "time": 92,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6989669704"
    }
  ],
  "_buildurl": "https://github.com/r-universe/muschellij2/actions/runs/25848187830",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/muschellij2/neurobase",
  "_commit": {
    "id": "27f97bb6e83aa856698dfae924e359ff7e40734d",
    "author": "muschellij2 <muschellij2@gmail.com>",
    "committer": "muschellij2 <muschellij2@gmail.com>",
    "message": "fixing flip_img spell check\n",
    "time": 1760629252
  },
  "_maintainer": {
    "name": "John Muschelli",
    "email": "muschellij2@gmail.com",
    "login": "muschellij2",
    "twitter": "@strictlystat",
    "uuid": 1075118
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "oro.nifti",
      "version": ">= 0.11.3",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 3.2.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "abind",
      "role": "Imports"
    },
    {
      "package": "matrixStats",
      "role": "Imports"
    },
    {
      "package": "R.utils",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "RNifti",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "reshape2",
      "role": "Suggests"
    },
    {
      "package": "httr",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "brainR",
      "role": "Suggests"
    }
  ],
  "_owner": "muschellij2",
  "_selfowned": true,
  "_usedby": 5,
  "_updates": [
    {
      "week": "2025-30",
      "n": 2
    },
    {
      "week": "2025-42",
      "n": 4
    }
  ],
  "_tags": [],
  "_stars": 7,
  "_contributors": [
    {
      "user": "muschellij2",
      "count": 270,
      "uuid": 1075118
    }
  ],
  "_userbio": {
    "uuid": 1075118,
    "type": "user",
    "name": "John Muschelli"
  },
  "_downloads": {
    "count": 656,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/neurobase"
  },
  "_mentions": 2,
  "_devurl": "https://github.com/muschellij2/neurobase",
  "_searchresults": 746,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/neurobase.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/muschellij2/neurobase",
  "_realowner": "muschellij2",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.1.1.1",
      "date": "2016-09-27"
    },
    {
      "version": "1.9.2",
      "date": "2017-01-06"
    },
    {
      "version": "1.13.2",
      "date": "2017-03-03"
    },
    {
      "version": "1.26.1",
      "date": "2018-02-01"
    },
    {
      "version": "1.27.6",
      "date": "2018-11-20"
    },
    {
      "version": "1.27.11",
      "date": "2019-09-10"
    },
    {
      "version": "1.29.0",
      "date": "2020-01-14"
    },
    {
      "version": "1.32.0",
      "date": "2021-03-31"
    },
    {
      "version": "1.32.1",
      "date": "2021-04-07"
    },
    {
      "version": "1.32.2",
      "date": "2022-08-24"
    },
    {
      "version": "1.32.3",
      "date": "2022-10-23"
    },
    {
      "version": "1.32.4",
      "date": "2024-05-09"
    },
    {
      "version": "1.33.0",
      "date": "2025-07-23"
    },
    {
      "version": "1.34.0",
      "date": "2025-10-17"
    }
  ],
  "_exports": [
    "apply_empty_dim",
    "applyEmptyImageDimensions",
    "breaker",
    "check_mask",
    "check_mask_fail",
    "check_nifti",
    "check_nifti_header",
    "check_outfile",
    "checkimg",
    "checknii",
    "checkniigz",
    "cog",
    "colorbar",
    "copyNIfTIHeader",
    "datatyper",
    "dicer",
    "double_ortho",
    "drop_empty_dim",
    "dropEmptyImageDimensions",
    "empty_dim_mask",
    "emptyImageDimensionsMask",
    "ensure_array",
    "ensure_nii",
    "ensure_nii_gz",
    "fast_dice",
    "fast_dice_tab",
    "fast_readnii",
    "file_imgext",
    "finite_img",
    "flip_img",
    "get_empty_dim",
    "getEmptyImageDimensions",
    "images2matrix",
    "img_color_df",
    "img_colour_df",
    "img_indices",
    "img_list_to_ts",
    "img_ts_to_df",
    "img_ts_to_list",
    "img_ts_to_matrix",
    "is_rpi_oriented",
    "mask_empty_dim",
    "mask_img",
    "mask_vals",
    "mask_vals<-",
    "maskEmptyImageDimensions",
    "minmax_img",
    "multi_overlay",
    "multi_overlay_center",
    "multi_overlay_diff",
    "newnii",
    "niftiarr",
    "nii.stub",
    "orient_rpi",
    "orient_rpi_file",
    "ortho_diff",
    "ortho2",
    "parse_img_ext",
    "quantile_img",
    "random_nifti",
    "randomize_mask",
    "read_rpi",
    "readNIfTI2",
    "readnii",
    "remake_img",
    "remap_filename",
    "replace_dropped_dimensions",
    "replace_empty_dim",
    "replace_outside_surface",
    "replaceEmptyImageDimensions",
    "rescale_img",
    "reverse_orient_rpi",
    "reverse_orient_rpi_file",
    "robust_window",
    "same_dims",
    "separate_img",
    "slice_colour_df",
    "subset_dti",
    "tempimg",
    "window_img",
    "write_nifti",
    "writeNIfTI2",
    "writenii",
    "xyz",
    "zero_pad",
    "zlimmer",
    "zscore_img"
  ],
  "_help": [
    {
      "page": "applyEmptyImageDimensions-methods",
      "title": "Apply Subsetting from Empty Image Dimensions",
      "topics": [
        "applyEmptyImageDimensions",
        "applyEmptyImageDimensions,anlz-method",
        "applyEmptyImageDimensions,ANY-method",
        "applyEmptyImageDimensions,array-method",
        "applyEmptyImageDimensions,character-method",
        "applyEmptyImageDimensions,factor-method",
        "applyEmptyImageDimensions,list-method",
        "applyEmptyImageDimensions,nifti-method",
        "applyEmptyImageDimensions-methods",
        "apply_empty_dim"
      ]
    },
    {
      "page": "boxplot.nifti",
      "title": "Boxplot of Values in an Image",
      "topics": [
        "boxplot.anlz",
        "boxplot.nifti"
      ]
    },
    {
      "page": "breaker",
      "title": "Find Breaks for nifti Image Plotting",
      "topics": [
        "breaker"
      ]
    },
    {
      "page": "check_mask",
      "title": "Check Mask is Binary",
      "topics": [
        "check_mask"
      ]
    },
    {
      "page": "check_mask_fail",
      "title": "Check Mask is Binary, Fail otherwise",
      "topics": [
        "check_mask_fail"
      ]
    },
    {
      "page": "check_nifti_header-methods",
      "title": "Check if nifti image or read in a nifti header",
      "topics": [
        "check_nifti_header",
        "check_nifti_header,anlz-method",
        "check_nifti_header,ANY-method",
        "check_nifti_header,array-method",
        "check_nifti_header,character-method",
        "check_nifti_header,factor-method",
        "check_nifti_header,list-method",
        "check_nifti_header,nifti-method",
        "check_nifti_header-methods"
      ]
    },
    {
      "page": "check_nifti-methods",
      "title": "Check if nifti image or read in a nifti image",
      "topics": [
        "check_nifti",
        "check_nifti,anlz-method",
        "check_nifti,ANY-method",
        "check_nifti,array-method",
        "check_nifti,character-method",
        "check_nifti,factor-method",
        "check_nifti,list-method",
        "check_nifti,nifti-method",
        "check_nifti-methods"
      ]
    },
    {
      "page": "check_outfile",
      "title": "Check output filename",
      "topics": [
        "check_outfile"
      ]
    },
    {
      "page": "checkimg-methods",
      "title": "Force object to filename",
      "topics": [
        "checkimg",
        "checkimg,ANY-method",
        "checkimg,character-method",
        "checkimg,list-method",
        "checkimg,nifti-method",
        "checkimg-methods"
      ]
    },
    {
      "page": "checknii-methods",
      "title": "Force object to filename with .nii extension",
      "topics": [
        "checknii",
        "checknii,ANY-method",
        "checknii,character-method",
        "checknii,factor-method",
        "checknii,list-method",
        "checknii,nifti-method",
        "checknii-methods",
        "ensure_nii"
      ]
    },
    {
      "page": "checkniigz-methods",
      "title": "Force object to filename with .nii.gz extension",
      "topics": [
        "checkniigz",
        "checkniigz,ANY-method",
        "checkniigz,character-method",
        "checkniigz,factor-method",
        "checkniigz,list-method",
        "checkniigz,nifti-method",
        "checkniigz-methods",
        "ensure_nii_gz"
      ]
    },
    {
      "page": "cog",
      "title": "Image Center of Gravity",
      "topics": [
        "cog"
      ]
    },
    {
      "page": "colorbar",
      "title": "Add a colorbar to an ortho2 object",
      "topics": [
        "colorbar"
      ]
    },
    {
      "page": "copyNIfTIHeader",
      "title": "Copy NIfTI Header to an array",
      "topics": [
        "copyNIfTIHeader"
      ]
    },
    {
      "page": "cut.nifti",
      "title": "Perform Cut on an image",
      "topics": [
        "cut.anlz",
        "cut.nifti"
      ]
    },
    {
      "page": "datatype",
      "title": "Change Data type for img",
      "topics": [
        "datatype",
        "datatyper"
      ]
    },
    {
      "page": "density.nifti",
      "title": "Density of Values in an Image",
      "topics": [
        "density.anlz",
        "density.nifti"
      ]
    },
    {
      "page": "dicer",
      "title": "Calculate Dice from a Table",
      "topics": [
        "dicer"
      ]
    },
    {
      "page": "double_ortho",
      "title": "Double Orthographic Display",
      "topics": [
        "double_ortho"
      ]
    },
    {
      "page": "dropEmptyImageDimensions",
      "title": "Drop Empty Image Dimensions",
      "topics": [
        "dropEmptyImageDimensions",
        "drop_empty_dim"
      ]
    },
    {
      "page": "emptyImageDimensionsMask",
      "title": "Make Mask from Empty Image Dimensions",
      "topics": [
        "emptyImageDimensionsMask",
        "empty_dim_mask"
      ]
    },
    {
      "page": "ensure_array",
      "title": "Ensure an array output",
      "topics": [
        "ensure_array"
      ]
    },
    {
      "page": "fast_dice_tab",
      "title": "Fast Dice Tabulation",
      "topics": [
        "fast_dice",
        "fast_dice_tab"
      ]
    },
    {
      "page": "fast_readnii",
      "title": "Reading NIfTI images through RNifti",
      "topics": [
        "fast_readnii"
      ]
    },
    {
      "page": "file_imgext",
      "title": "Get Image file extension",
      "topics": [
        "file_imgext"
      ]
    },
    {
      "page": "finite_img-methods",
      "title": "Finite Image",
      "topics": [
        "finite_img",
        "finite_img,ANY-method",
        "finite_img,array-method",
        "finite_img,character-method",
        "finite_img,list-method",
        "finite_img,nifti-method",
        "finite_img-methods"
      ]
    },
    {
      "page": "flip_img",
      "title": "Flip NIfTI Image",
      "topics": [
        "flip_img"
      ]
    },
    {
      "page": "getEmptyImageDimensions",
      "title": "Get Empty Image Dimensions",
      "topics": [
        "getEmptyImageDimensions",
        "get_empty_dim"
      ]
    },
    {
      "page": "hist.nifti",
      "title": "Histogram of Values in an Image",
      "topics": [
        "hist.anlz",
        "hist.nifti"
      ]
    },
    {
      "page": "images2matrix",
      "title": "Transform set of images to matrix",
      "topics": [
        "images2matrix"
      ]
    },
    {
      "page": "img_colour_df",
      "title": "Convert Image to Data.frame with Colors",
      "topics": [
        "img_color_df",
        "img_colour_df"
      ]
    },
    {
      "page": "img_indices",
      "title": "Retrieve Image Indices",
      "topics": [
        "img_indices"
      ]
    },
    {
      "page": "img_list_to_ts",
      "title": "Image List to Time Series",
      "topics": [
        "img_list_to_ts"
      ]
    },
    {
      "page": "img_ts_to_df",
      "title": "Image Time Series to Data.frame",
      "topics": [
        "img_ts_to_df"
      ]
    },
    {
      "page": "img_ts_to_list",
      "title": "Image Time Series to list",
      "topics": [
        "img_ts_to_list"
      ]
    },
    {
      "page": "img_ts_to_matrix",
      "title": "Image Time Series to Matrix",
      "topics": [
        "img_ts_to_matrix"
      ]
    },
    {
      "page": "mask_img",
      "title": "Mask Image",
      "topics": [
        "mask_img"
      ]
    },
    {
      "page": "mask_vals-methods",
      "title": "Extract or Replace Values Inside a Mask",
      "topics": [
        "mask_vals",
        "mask_vals-methods,",
        "mask_vals<-",
        "mask_vals<-,anlz,ANY,ANY-method",
        "mask_vals<-,anlz-method",
        "mask_vals<-,array,ANY,ANY-method",
        "mask_vals<-,array-method",
        "mask_vals<-,nifti,ANY,ANY-method",
        "mask_vals<-,nifti-method"
      ]
    },
    {
      "page": "maskEmptyImageDimensions-methods",
      "title": "Apply Masking from Empty Image Dimensions",
      "topics": [
        "maskEmptyImageDimensions",
        "maskEmptyImageDimensions,anlz-method",
        "maskEmptyImageDimensions,ANY-method",
        "maskEmptyImageDimensions,array-method",
        "maskEmptyImageDimensions,character-method",
        "maskEmptyImageDimensions,factor-method",
        "maskEmptyImageDimensions,list-method",
        "maskEmptyImageDimensions,nifti-method",
        "maskEmptyImageDimensions-methods",
        "mask_empty_dim"
      ]
    },
    {
      "page": "mean.nifti",
      "title": "Mean of Values in an Image",
      "topics": [
        "mean.anlz",
        "mean.nifti"
      ]
    },
    {
      "page": "minmax_img-methods",
      "title": "Normalize Image using Range",
      "topics": [
        "minmax_img",
        "minmax_img,ANY-method",
        "minmax_img,array-method",
        "minmax_img,character-method",
        "minmax_img,factor-method",
        "minmax_img,list-method",
        "minmax_img,nifti-method",
        "minmax_img-methods"
      ]
    },
    {
      "page": "multi_overlay",
      "title": "Create Multi-Image Plot with Overlays",
      "topics": [
        "multi_overlay",
        "multi_overlay_center"
      ]
    },
    {
      "page": "newnii",
      "title": "Resets image parameters for a copied nifti object",
      "topics": [
        "newnii"
      ]
    },
    {
      "page": "niftiarr",
      "title": "Make new nifti from array",
      "topics": [
        "niftiarr"
      ]
    },
    {
      "page": "nii.stub",
      "title": "Grab nii file stubname",
      "topics": [
        "nii.stub"
      ]
    },
    {
      "page": "orient_rpi",
      "title": "Reorient an Image to RPI orientation",
      "topics": [
        "is_rpi_oriented",
        "orient_rpi",
        "orient_rpi_file"
      ]
    },
    {
      "page": "ortho_diff",
      "title": "Plot differences for Prediction and Gold Standard",
      "topics": [
        "multi_overlay_diff",
        "ortho_diff"
      ]
    },
    {
      "page": "ortho2",
      "title": "Orthographic Display, added options",
      "topics": [
        "ortho2"
      ]
    },
    {
      "page": "parse_img_ext",
      "title": "Parse Image Extensions",
      "topics": [
        "parse_img_ext"
      ]
    },
    {
      "page": "quantile_img",
      "title": "Create Quantile Image",
      "topics": [
        "quantile_img"
      ]
    },
    {
      "page": "quantile.nifti",
      "title": "Sample Quantiles",
      "topics": [
        "quantile.anlz",
        "quantile.nifti"
      ]
    },
    {
      "page": "random_nifti",
      "title": "Create Random `nifti` object",
      "topics": [
        "random_nifti"
      ]
    },
    {
      "page": "randomize_mask",
      "title": "Randomize Image based on Mask",
      "topics": [
        "randomize_mask"
      ]
    },
    {
      "page": "read_rpi",
      "title": "Read NIfTI file reoriented to RPI",
      "topics": [
        "read_rpi"
      ]
    },
    {
      "page": "readNIfTI2",
      "title": "readNIfTI with default non-reorientation",
      "topics": [
        "readNIfTI2",
        "readnii"
      ]
    },
    {
      "page": "remake_img",
      "title": "Remake Image from Vector",
      "topics": [
        "remake_img"
      ]
    },
    {
      "page": "remap_filename",
      "title": "Build Filename (usually for images)",
      "topics": [
        "remap_filename"
      ]
    },
    {
      "page": "replace_dropped_dimensions",
      "title": "Remake Dropped Dimensions",
      "topics": [
        "replace_dropped_dimensions"
      ]
    },
    {
      "page": "replace_outside_surface",
      "title": "Replace Values Outside Surface of image",
      "topics": [
        "replace_outside_surface"
      ]
    },
    {
      "page": "replaceEmptyImageDimensions-methods",
      "title": "Replace Subsetting from Empty Image Dimensions",
      "topics": [
        "replaceEmptyImageDimensions",
        "replaceEmptyImageDimensions,anlz-method",
        "replaceEmptyImageDimensions,ANY-method",
        "replaceEmptyImageDimensions,array-method",
        "replaceEmptyImageDimensions,character-method",
        "replaceEmptyImageDimensions,factor-method",
        "replaceEmptyImageDimensions,list-method",
        "replaceEmptyImageDimensions,nifti-method",
        "replaceEmptyImageDimensions-methods",
        "replace_empty_dim"
      ]
    },
    {
      "page": "rescale_img",
      "title": "Image Rescaler",
      "topics": [
        "rescale_img"
      ]
    },
    {
      "page": "reverse_orient_rpi",
      "title": "Reverse Reorientation an Image to RPI orientation",
      "topics": [
        "reverse_orient_rpi",
        "reverse_orient_rpi_file"
      ]
    },
    {
      "page": "robust_window",
      "title": "Window image based on quantiles of Image",
      "topics": [
        "robust_window"
      ]
    },
    {
      "page": "same_dims",
      "title": "Check if Objects have Same Dimensions",
      "topics": [
        "same_dims"
      ]
    },
    {
      "page": "separate_img-methods",
      "title": "Separate Labeled Image into Multiple Binary Images",
      "topics": [
        "separate_img",
        "separate_img,ANY-method",
        "separate_img,array-method",
        "separate_img,character-method",
        "separate_img,factor-method",
        "separate_img,list-method",
        "separate_img,nifti-method",
        "separate_img-methods"
      ]
    },
    {
      "page": "slice_colour_df",
      "title": "Slice a Image Color Data.frame",
      "topics": [
        "slice_colour_df"
      ]
    },
    {
      "page": "subset_dti-methods",
      "title": "Subset DTI data based on b-values #'",
      "topics": [
        "subset_dti",
        "subset_dti,ANY-method",
        "subset_dti,character-method",
        "subset_dti,list-method",
        "subset_dti,nifti-method",
        "subset_dti-methods"
      ]
    },
    {
      "page": "tempimg",
      "title": "Create temporary nii.gz file",
      "topics": [
        "tempimg"
      ]
    },
    {
      "page": "window_img",
      "title": "nifti image windower",
      "topics": [
        "window_img"
      ]
    },
    {
      "page": "write_nifti",
      "title": "General NIfTI Writer",
      "topics": [
        "write_nifti"
      ]
    },
    {
      "page": "writeNIfTI2",
      "title": "writeNIfTI with default non-reorientation",
      "topics": [
        "writeNIfTI2",
        "writenii"
      ]
    },
    {
      "page": "xyz",
      "title": "Image Center of Gravity Wrapper",
      "topics": [
        "xyz"
      ]
    },
    {
      "page": "zero_pad",
      "title": "Zero pads an image",
      "topics": [
        "zero_pad"
      ]
    },
    {
      "page": "zlimmer",
      "title": "Find Image z-limits",
      "topics": [
        "zlimmer"
      ]
    },
    {
      "page": "zscore_img",
      "title": "Get Z-score over a margin of an img",
      "topics": [
        "zscore_img"
      ]
    }
  ],
  "_readme": "https://github.com/muschellij2/neurobase/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "bitops",
    "matrixStats",
    "oro.nifti",
    "R.methodsS3",
    "R.oo",
    "R.utils",
    "Rcpp",
    "RNifti"
  ],
  "_vignettes": [
    {
      "source": "neurobase.Rmd",
      "filename": "neurobase.html",
      "title": "NIfTI Basics using the Eve atlas",
      "author": "John Muschelli",
      "engine": "knitr::rmarkdown",
      "headings": [
        "The nifti object",
        "S4 Implementation",
        "Accessing Information from a nifti",
        "Accessing the \"data\"",
        "Show all slots",
        "Other objects",
        "NIfTI Input/Output: readnii/writenii vs. readNIfTI/writeNIfTI",
        "Option reorient = FALSE",
        "Operations of nifti objects",
        "Logical operators",
        "Arithmetic on nifti objects",
        "Summaries",
        "Visualization of nifti objects",
        "Orthographic view",
        "Differences between orthographic and ortho2",
        "Bright values",
        "Double orthographic view",
        "Single slice view",
        "Different Planes",
        "Overlaying slices",
        "Dropping empty dimensions",
        "Dropping with multiple images",
        "Adding back the dropped dimensions",
        "Manipulating nifti images",
        "Creating copies of nifti",
        "Copying header information",
        "Creating a \"shell\"",
        "Masking",
        "Vectorizing a nifti",
        "Subsetting via masks"
      ],
      "created": "2017-01-31 18:29:02",
      "modified": "2021-03-30 22:39:06",
      "commits": 5
    },
    {
      "source": "simple_io.Rmd",
      "filename": "simple_io.html",
      "title": "Simple Image Input/Output",
      "engine": "knitr::rmarkdown",
      "headings": [
        "The nifti object",
        "Downloading an Image",
        "Reading in an image",
        "Writing Images",
        "Operations of nifti objects",
        "Logical operators",
        "Arithmetic on nifti objects",
        "Visualization of nifti objects",
        "Orthographic view",
        "Single slice view",
        "Different Planes",
        "Overlaying slices"
      ],
      "created": "2019-09-12 18:04:14",
      "modified": "2019-09-12 18:04:14",
      "commits": 1
    },
    {
      "source": "nifti_basics.Rmd",
      "filename": "nifti_basics.html",
      "title": "The nifti object",
      "engine": "knitr::rmarkdown",
      "headings": [
        "The nifti object",
        "S4 Implementation",
        "Accessing Information from a nifti",
        "Accessing the \"data\"",
        "Show all slots",
        "Other objects",
        "NIfTI Input/Output: readnii/writenii vs. readNIfTI/writeNIfTI",
        "Option reorient = FALSE",
        "Operations of nifti objects",
        "Logical operators",
        "Arithmetic on nifti objects",
        "Summaries",
        "Visualization of nifti objects",
        "Orthographic view",
        "Differences between orthographic and ortho2",
        "Bright values",
        "Double orthographic view",
        "Single slice view",
        "Different Planes",
        "Overlaying slices",
        "Dropping empty dimensions",
        "Dropping with multiple images",
        "Adding back the dropped dimensions",
        "Manipulating nifti images",
        "Creating copies of nifti",
        "Copying header information",
        "Creating a \"shell\"",
        "Masking",
        "Vectorizing a nifti",
        "Subsetting via masks",
        "Creating data.frames",
        "Bi-variate distributions",
        "Marginal distributions"
      ],
      "created": "2016-12-08 18:31:18",
      "modified": "2021-03-30 22:39:06",
      "commits": 7
    }
  ],
  "_score": 8.672079376926252,
  "_indexed": true,
  "_nocasepkg": "neurobase",
  "_universes": [
    "muschellij2"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.34.0",
      "date": "2026-05-14T07:46:41.000Z",
      "distro": "noble",
      "commit": "27f97bb6e83aa856698dfae924e359ff7e40734d",
      "fileid": "fa4b1b08d8093e5c95df2b623e0449a4a2227e214504f69074da8039ba6db1b8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/muschellij2/actions/runs/25848187830"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.34.0",
      "date": "2026-05-14T07:46:41.000Z",
      "distro": "noble",
      "commit": "27f97bb6e83aa856698dfae924e359ff7e40734d",
      "fileid": "82b66b3182784d2404d647d0c624fc762b18fbf60f7bc53a1a48d721beff50a1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/muschellij2/actions/runs/25848187830"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.34.0",
      "date": "2026-05-14T07:46:09.000Z",
      "commit": "27f97bb6e83aa856698dfae924e359ff7e40734d",
      "fileid": "23103f8abd142c84cf1f7d629a18d9dfc709908e7d6a5d0f65d12bc33b8dd064",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/muschellij2/actions/runs/25848187830"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.34.0",
      "date": "2026-05-14T07:46:08.000Z",
      "commit": "27f97bb6e83aa856698dfae924e359ff7e40734d",
      "fileid": "97aaaf81d718af0295b6da856bba4c9a663f0b9001aced5e550a8168eebb4cb6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/muschellij2/actions/runs/25848187830"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.34.0",
      "date": "2026-05-14T07:45:49.000Z",
      "commit": "27f97bb6e83aa856698dfae924e359ff7e40734d",
      "fileid": "4547eba931393d0d5c03b0e751ead8644eb3d160cace4789177c5e8077f15ec6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/muschellij2/actions/runs/25848187830"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.34.0",
      "date": "2026-05-14T07:46:07.000Z",
      "commit": "27f97bb6e83aa856698dfae924e359ff7e40734d",
      "fileid": "c1fd98c50e6a58752ff2dd901315ecc35a604e16fef3cb64a31d85193437cbe7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/muschellij2/actions/runs/25848187830"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.34.0",
      "date": "2026-05-14T07:45:43.000Z",
      "commit": "27f97bb6e83aa856698dfae924e359ff7e40734d",
      "fileid": "7100218fdb268278ece082c0c3945c0b3981894d70af2ab66db65b8606aacffc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/muschellij2/actions/runs/25848187830"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.34.0",
      "date": "2026-05-22T09:11:30.000Z",
      "commit": "27f97bb6e83aa856698dfae924e359ff7e40734d",
      "fileid": "a3760fbb879f97703af7076812987b87299cf3ee9ffe7cedaf0cac65ae3f9fea",
      "status": "success",
      "buildurl": "https://github.com/r-universe/muschellij2/actions/runs/25848187830"
    }
  ]
}