Changes in version 2015-12-01                      

Major changes

  - Changed default reading/writing to readnii/writenii

                     Changes in version 2015-10-20                      

Major changes

  - Added readnii and writenii

  - Added ortho_diff

                     Changes in version 2015-05-20                      

Major Changes

  - Moved functions such as cal_img to oro.nifti package. They are all
    legacies, such as cal_img still works, but calibrateImage and other
    camelCase functions have been made default.

  - Fixed fsl_biascorrect.

                       Changes in version 2.27.1                        

  - Added fsl_standard_space_roi.

                 Changes in version 2.27.0 (2025-09-09)                 

  - Updated docs for link issue for CRAN.

                 Changes in version 2.25.3 (2024-05-10)                 

  - Updated docs for neurobase

                 Changes in version 2.25.2 (2022-08-25)                 

  - Pushing back to CRAN after neurobase is back on.

                       Changes in version 2.25.1                        

  - Moved orient_rpi* functionality to neurobase rather than fslr due to
    dependencies.
  - Added fsl_std_file.

                       Changes in version 2.25.0                        

  - Added rpi* functionality that uses RNifti and is likely what we'd
    want to use.

                       Changes in version 2.24.0                        

  - Fixes bug with getForms (and therefore a lot of stuff) with FSL
    version 6.0 and greater.

  - Added quickshear_deface_image to remove faces based on the
    QuickShear method and nipy/quickshear.
  - Added mridefacer to add to the anonymization pipelines.
  - Added invert_xfm and other convert_xfm functionality.
  - Added fslreorient2std_mat to get the matrix output from
    fslreorient2std.

                 Changes in version 2.23.0 (2019-07-18)                 

  - Added face_removal_mask for removal of faces, based on pydeface.
  - Fixed fslsmooth to return an output file if retimg = FALSE.

                 Changes in version 2.22.0 (2018-11-19)                 

  - fixed bug in reverse_rpi_orient_file that was causing ERROR: Could
    not open file /usr/local/fsl/bin/fslswapdim: 107: [: =: unexpected
    operator error.
  - added topup to the exports.
  - added fsl_resample.
  - Added fsl_cluster. Removed cluster from exports due to conflicts.
  - added read_xfm for reading transformations.
  - Fixes mid_sagittal_align for flipping.
  - Removed matrixStats as unnecessary dependency.

                 Changes in version 2.17.3 (2018-02-02)                 

  - Added functionality of topup and other DTI-based tools.
  - Tried to get susan to work properly.
  - Need to incorporate fsleyes in the future release.