Package: cifti 0.5.0

cifti: Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files

Functions for the input/output and visualization of medical imaging data in the form of 'CIFTI' files <https://www.nitrc.org/projects/cifti/>.

Authors:John Muschelli [aut, cre]

cifti_0.5.0.tar.gz
cifti_0.5.0.zip(r-4.7)cifti_0.5.0.zip(r-4.6)cifti_0.5.0.zip(r-4.5)
cifti_0.5.0.tgz(r-4.6-any)cifti_0.5.0.tgz(r-4.5-any)
cifti_0.5.0.tar.gz(r-4.7-any)cifti_0.5.0.tar.gz(r-4.6-any)
cifti_0.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
cifti/json (API)

# Install 'cifti' in R:
install.packages('cifti', repos = c('https://muschellij2.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/muschellij2/cifti/issues

On CRAN:

Conda:

5.80 score 3 stars 104 scripts 566 downloads 1 mentions 27 exports 13 dependencies

Last updated from:c7847782eb. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK132
source / vignettesOK241
linux-release-x86_64OK132
macos-release-arm64OK119
macos-oldrel-arm64OK117
windows-develOK82
windows-releaseOK73
windows-oldrelOK82
wasm-releaseOK111

Exports:cifti_as_listcifti_brain_structscifti_coords_gifticifti_datacifti_read_charcifti_xmlcifti_xml_txtdownload_cifti_dataget_brain_modelget_cifti_typeget_named_mapget_parcelget_surfaceget_volumehave_cifti_test_datais_cifti_numericis.ciftimatrix_ind_map_nodesnifti_2_hdrparse_brain_modelparse_named_mapparse_parcelparse_surfaceparse_volumeread_ciftireadCIFTIreadcii

Dependencies:abindbase64encbitopscligiftioro.niftiR.methodsS3R.ooR.utilsRcpprlangRNiftixml2

Testing the Dimensions with CIFTI Files
Load MSC data and test data from cifti package | For reference: MSC 01 (65890 * 818) (using matlab ft_read_cifti), showing first 5 rows & columns | MSC Sub-01 Session 1 (sub-MSC01_ses-func01_task-rest_bold_32k_fsLR.dtseries.nii) | Data where dimensions are row x dense loads fine. Updated function loads them the same way as before. | Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii | Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii | Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii | Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii (dense label on vertex level)
Rendered fromtest_dims_MSC.Rmdusingknitr::rmarkdown

Last update: 2026-01-13
Started: 2019-02-10

Working with CIFTI Files
Rendered fromcifti_work.Rmdusingknitr::rmarkdown

Last update: 2026-01-13
Started: 2017-10-08

Readme and manuals

Help Manual

Help pageTopics
Extract Brain Structures from CIFTI Brain Modelscifti_brain_structs
Map CIfTI values to Coordinates using GIfTIcifti_coords_gifti
Extract CIFTI data from filecifti_data
Read characters with embedded nullscifti_read_char
Extract CIFTI XMLcifti_xml cifti_xml_txt
Download CIFTI Test Datadownload_cifti_data
Get Generic CIFTI Typecifti_as_list get_cifti_type
Check Presence of CIFTI Test Datahave_cifti_test_data
Test of numeric CIFTI fieldis_cifti_numeric
Test if CIFTIis.cifti
Extract MatrixIndicesMap nodes from CIFTImatrix_ind_map_nodes
Read NIfTI-2 Headernifti_2_hdr
Parse BrainModel from CIFTIget_brain_model parse_brain_model
Parse Named Map from CIFTIget_named_map parse_named_map
Parse Parcel from CIFTIget_parcel parse_parcel
Parse Surface from CIFTIget_surface parse_surface
Parse Volume from CIFTIget_volume parse_volume
Read CIFTI FilereadCIFTI readcii read_cifti