rscopus - Scopus Database 'API' Interface

Uses Elsevier 'Scopus' API <https://dev.elsevier.com/sc_apis.html> to download information about authors and their citations.

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bibliometricsscopusscopus-api

10.40 score 85 stars 3 dependents 156 scripts 17k downloads

neurobase - 'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects

Base package for 'Neuroconductor', which includes many helper functions that interact with objects of class 'nifti', implemented by package 'oro.nifti', for reading/writing and also other manipulation functions.

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8.67 score 7 stars 5 dependents 746 scripts 656 downloads

fslr - Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Wrapper functions that interface with 'FSL' <http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'FSL' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'FSL' command and returns an R object of class 'nifti' if desired.

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fslfslrneuroimagingneuroimaging-analysisneuroimaging-data-science

8.30 score 45 stars 492 scripts 665 downloads

gifti - Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information

Functions to read in the geometry format under the 'Neuroimaging' 'Informatics' Technology Initiative ('NIfTI'), called 'GIFTI' <https://www.nitrc.org/projects/gifti/>. These files contain surfaces of brain imaging data.

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7.76 score 4 stars 14 dependents 113 scripts 1.5k downloads

freesurfer - Wrapper Functions for 'FreeSurfer'

Wrapper functions that interface with 'Freesurfer' <https://surfer.nmr.mgh.harvard.edu/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'Freesurfer' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'Freesurfer' command and returns an R object of class 'nifti' or necessary output.

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7.16 score 10 stars 73 scripts 216 downloads

diffr - Display Differences Between Two Files using Codediff Library

An R interface to the 'codediff' JavaScript library (a copy of which is included in the package, see <https://github.com/danvk/codediff.js> for information). Allows for visualization of the difference between 2 files, usually text files or R scripts, in a browser.

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6.33 score 67 stars 3 dependents 71 scripts 794 downloads

WhiteStripe - White Matter Normalization for Magnetic Resonance Images

Shinohara (2014) <doi:10.1016/j.nicl.2014.08.008> introduced 'WhiteStripe', an intensity-based normalization of T1 and T2 images, where normal appearing white matter performs well, but requires segmentation. This method performs white matter mean and standard deviation estimates on data that has been rigidly-registered to the 'MNI' template and uses histogram-based methods.

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6.22 score 9 stars 62 scripts 268 downloads

cifti - Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files

Functions for the input/output and visualization of medical imaging data in the form of 'CIFTI' files <https://www.nitrc.org/projects/cifti/>.

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5.82 score 3 stars 109 scripts 567 downloads

matlabr - An Interface for MATLAB using System Calls

Provides users to call MATLAB from using the "system" command. Allows users to submit lines of code or MATLAB m files. This is in comparison to 'R.matlab', which creates a MATLAB server.

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5.72 score 13 stars 1 dependents 134 scripts 283 downloads

neurohcp - Human 'Connectome' Project Interface

Downloads and reads data from Human 'Connectome' Project <https://db.humanconnectome.org> using Amazon Web Services ('AWS') 'S3' buckets.

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5.37 score 9 stars 52 scripts 255 downloads

glassdoor - Interface to 'Glassdoor' API

Interacts with the 'Glassdoor' API <https://www.glassdoor.com/developer/index.htm>. Allows the user to search job statistics, employer statistics, and job progression, where 'Glassdoor' provides a breakdown of other jobs a person did after their current one.

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4.69 score 7 stars 14 scripts 552 downloads

brainR - Helper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging

This includes functions for creating 3D and 4D images using 'WebGL', 'rgl', and 'JavaScript' commands. This package relies on the X toolkit ('XTK', <https://github.com/xtk/X#readme>).

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4.65 score 12 stars 1 dependents 25 scripts 300 downloads

mapnhanespa - Map Quantiles for Physical Activity from 'NHANES'

Maps physical activity from the National Health and Nutrition Examination Survey ('NHANES') study into population-based quantiles.

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4.54 score 13 downloads

gcite - Google Citation Parser

Scrapes Google Citation pages and creates data frames of citations over time.

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3.73 score 3 stars 36 scripts 284 downloads

stapler - Simultaneous Truth and Performance Level Estimation

An implementation of Simultaneous Truth and Performance Level Estimation (STAPLE) <doi:10.1109/TMI.2004.828354>. This method is used when there are multiple raters for an object, typically an image, and this method fuses these ratings into one rating. It uses an expectation-maximization method to estimate this rating and the individual specificity/sensitivity for each rater.

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3.70 score 1 stars 10 scripts 189 downloads

mscstts - R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API

R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API, including voice synthesis. A valid account must be registered at the Microsoft Cognitive Services website <https://azure.microsoft.com/en-us/products/ai-services/> in order to obtain a (free) API key. Without an API key, this package will not work properly.

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3.68 score 8 stars 12 scripts 244 downloads

kirby21.base - Example Data from the Multi-Modal MRI 'Reproducibility' Resource

Multi-modal magnetic resonance imaging ('MRI') data from the 'Kirby21' 'reproducibility' study <https://www.nitrc.org/projects/multimodal/>, including functional and structural imaging.

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3.58 score 2 dependents 64 scripts 204 downloads

kirby21.t1 - Example T1 Structural Data from the Multi-Modal MRI 'Reproducibility' Resource

Structural T1 magnetic resonance imaging ('MRI') data from the 'Kirby21' 'reproducibility' study <doi:10.1016/j.neuroimage.2010.11.047>.

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3.41 score 51 scripts 221 downloads

kirby21.fmri - Example Functional Imaging Data from the Multi-Modal MRI 'Reproducibility' Resource

Functional magnetic resonance imaging ('fMRI') data from the 'Kirby21' 'reproducibility' study <doi:10.1016/j.neuroimage.2010.11.047>.

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3.30 score 40 scripts 239 downloads

cforward - Forward Selection using Concordance/C-Index

Performs forward model selection, using the C-index/concordance in survival analysis models.

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2.70 score 3 scripts 248 downloads

stepcount - Estimate Step Counts from 'Accelerometry' Data

Interfaces the 'stepcount' Python module <https://github.com/OxWearables/stepcount> to estimate step counts and other activities from 'accelerometry' data.

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1.78 score 12 scripts 170 downloads