rscopus - Scopus Database 'API' Interface

Uses Elsevier 'Scopus' API <https://dev.elsevier.com/sc_apis.html> to download information about authors and their citations.

Last updated 10 months ago

bibliometricsscopusscopus-api

9.62 score 75 stars 3 packages 114 scripts 9.1k downloads

neurobase - 'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects

Base package for 'Neuroconductor', which includes many helper functions that interact with objects of class 'nifti', implemented by package 'oro.nifti', for reading/writing and also other manipulation functions.

Last updated 7 months ago

8.52 score 5 stars 8 packages 462 scripts 657 downloads

fslr - Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Wrapper functions that interface with 'FSL' <http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'FSL' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'FSL' command and returns an R object of class 'nifti' if desired.

Last updated 7 months ago

fslfslrneuroimagingneuroimaging-analysisneuroimaging-data-science

8.19 score 41 stars 1 packages 420 scripts 389 downloads

freesurfer - Wrapper Functions for 'Freesurfer'

Wrapper functions that interface with 'Freesurfer' <https://surfer.nmr.mgh.harvard.edu/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'Freesurfer' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'Freesurfer' command and returns an R object of class 'nifti' or necessary output.

Last updated 6 months ago

7.69 score 10 stars 1 packages 55 scripts 299 downloads

gifti - Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information

Functions to read in the geometry format under the 'Neuroimaging' 'Informatics' Technology Initiative ('NIfTI'), called 'GIFTI' <https://www.nitrc.org/projects/gifti/>. These files contain surfaces of brain imaging data.

Last updated 3 years ago

6.87 score 4 stars 8 packages 78 scripts 531 downloads

WhiteStripe - White Matter Normalization for Magnetic Resonance Images

Shinohara (2014) <doi:10.1016/j.nicl.2014.08.008> introduced 'WhiteStripe', an intensity-based normalization of T1 and T2 images, where normal appearing white matter performs well, but requires segmentation. This method performs white matter mean and standard deviation estimates on data that has been rigidly-registered to the 'MNI' template and uses histogram-based methods.

Last updated 7 months ago

6.22 score 9 stars 61 scripts 253 downloads

diffr - Display Differences Between Two Files using Codediff Library

An R interface to the 'codediff' JavaScript library (a copy of which is included in the package, see <https://github.com/danvk/codediff.js> for information). Allows for visualization of the difference between 2 files, usually text files or R scripts, in a browser.

Last updated 6 months ago

6.14 score 64 stars 3 packages 48 scripts 824 downloads

cifti - Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files

Functions for the input/output and visualization of medical imaging data in the form of 'CIFTI' files <https://www.nitrc.org/projects/cifti/>.

Last updated 4 years ago

5.69 score 3 stars 81 scripts 177 downloads

matlabr - An Interface for MATLAB using System Calls

Provides users to call MATLAB from using the "system" command. Allows users to submit lines of code or MATLAB m files. This is in comparison to 'R.matlab', which creates a MATLAB server.

Last updated 4 years ago

5.36 score 13 stars 1 packages 118 scripts 283 downloads

neurohcp - Human 'Connectome' Project Interface

Downloads and reads data from Human 'Connectome' Project <https://db.humanconnectome.org> using Amazon Web Services ('AWS') 'S3' buckets.

Last updated 3 years ago

5.35 score 9 stars 50 scripts 224 downloads

glassdoor - Interface to 'Glassdoor' API

Interacts with the 'Glassdoor' API <https://www.glassdoor.com/developer/index.htm>. Allows the user to search job statistics, employer statistics, and job progression, where 'Glassdoor' provides a breakdown of other jobs a person did after their current one.

Last updated 6 years ago

4.59 score 6 stars 13 scripts 113 downloads

brainR - Helper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging

This includes functions for creating 3D and 4D images using 'WebGL', 'rgl', and 'JavaScript' commands. This package relies on the X toolkit ('XTK', <https://github.com/xtk/X#readme>).

Last updated 4 years ago

4.45 score 11 stars 1 packages 17 scripts 279 downloads

leanpubr - 'Leanpub' API Interface

Provides access to the 'Leanpub' API <https://leanpub.com/help/api> for gathering information about publications and submissions to the 'Leanpub' platform.

Last updated 6 years ago

3.81 score 13 scripts 115 downloads

neurocInstall - 'Neuroconductor' Installer

Installs 'Neuroconductor' packages from the release repository <https://neuroconductor.org/releases/> or from 'GitHub'.

Last updated 1 months ago

3.70 score 4 scripts 119 downloads

stapler - Simultaneous Truth and Performance Level Estimation

An implementation of Simultaneous Truth and Performance Level Estimation (STAPLE) <doi:10.1109/TMI.2004.828354>. This method is used when there are multiple raters for an object, typically an image, and this method fuses these ratings into one rating. It uses an expectation-maximization method to estimate this rating and the individual specificity/sensitivity for each rater.

Last updated 4 years ago

3.70 score 1 stars 8 scripts 128 downloads

mscstts - R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API

R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API, including voice synthesis. A valid account must be registered at the Microsoft Cognitive Services website <https://azure.microsoft.com/services/cognitive-services/> in order to obtain a (free) API key. Without an API key, this package will not work properly.

Last updated 2 years ago

3.68 score 8 stars 12 scripts 287 downloads

gcite - Google Citation Parser

Scrapes Google Citation pages and creates data frames of citations over time.

Last updated 3 years ago

3.68 score 3 stars 32 scripts 218 downloads

kirby21.base - Example Data from the Multi-Modal MRI 'Reproducibility' Resource

Multi-modal magnetic resonance imaging ('MRI') data from the 'Kirby21' 'reproducibility' study <https://www.nitrc.org/projects/multimodal/>, including functional and structural imaging.

Last updated 4 years ago

3.59 score 2 packages 65 scripts 160 downloads

kirby21.t1 - Example T1 Structural Data from the Multi-Modal MRI 'Reproducibility' Resource

Structural T1 magnetic resonance imaging ('MRI') data from the 'Kirby21' 'reproducibility' study <doi:10.1016/j.neuroimage.2010.11.047>.

Last updated 4 years ago

3.41 score 51 scripts 166 downloads

kirby21.fmri - Example Functional Imaging Data from the Multi-Modal MRI 'Reproducibility' Resource

Functional magnetic resonance imaging ('fMRI') data from the 'Kirby21' 'reproducibility' study <doi:10.1016/j.neuroimage.2010.11.047>.

Last updated 6 years ago

3.30 score 40 scripts 131 downloads

cforward - Forward Selection using Concordance/C-Index

Performs forward model selection, using the C-index/concordance in survival analysis models.

Last updated 4 years ago

2.70 score 2 scripts 711 downloads

stepcount - Estimate Step Counts from 'Accelerometry' Data

Interfaces the 'stepcount' Python module <https://github.com/OxWearables/stepcount> to estimate step counts and other activities from 'accelerometry' data.

Last updated 2 months ago

1.74 score 11 scripts 255 downloads