rscopus - Scopus Database 'API' Interface

Uses Elsevier 'Scopus' API <https://dev.elsevier.com/sc_apis.html> to download information about authors and their citations.

Last updated 1 years ago

bibliometricsscopusscopus-api

9.33 score 77 stars 3 dependents 124 scripts 8.3k downloads

neurobase - 'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects

Base package for 'Neuroconductor', which includes many helper functions that interact with objects of class 'nifti', implemented by package 'oro.nifti', for reading/writing and also other manipulation functions.

Last updated 18 days ago

8.49 score 5 stars 7 dependents 486 scripts 653 downloads

fslr - Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Wrapper functions that interface with 'FSL' <http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'FSL' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'FSL' command and returns an R object of class 'nifti' if desired.

Last updated 17 days ago

fslfslrneuroimagingneuroimaging-analysisneuroimaging-data-science

8.01 score 41 stars 420 scripts 367 downloads

freesurfer - Wrapper Functions for 'Freesurfer'

Wrapper functions that interface with 'Freesurfer' <https://surfer.nmr.mgh.harvard.edu/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'Freesurfer' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'Freesurfer' command and returns an R object of class 'nifti' or necessary output.

Last updated 2 months ago

7.69 score 10 stars 1 dependents 55 scripts 375 downloads

gifti - Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information

Functions to read in the geometry format under the 'Neuroimaging' 'Informatics' Technology Initiative ('NIfTI'), called 'GIFTI' <https://www.nitrc.org/projects/gifti/>. These files contain surfaces of brain imaging data.

Last updated 3 years ago

6.90 score 4 stars 8 dependents 82 scripts 744 downloads

WhiteStripe - White Matter Normalization for Magnetic Resonance Images

Shinohara (2014) <doi:10.1016/j.nicl.2014.08.008> introduced 'WhiteStripe', an intensity-based normalization of T1 and T2 images, where normal appearing white matter performs well, but requires segmentation. This method performs white matter mean and standard deviation estimates on data that has been rigidly-registered to the 'MNI' template and uses histogram-based methods.

Last updated 10 months ago

6.22 score 9 stars 61 scripts 248 downloads

diffr - Display Differences Between Two Files using Codediff Library

An R interface to the 'codediff' JavaScript library (a copy of which is included in the package, see <https://github.com/danvk/codediff.js> for information). Allows for visualization of the difference between 2 files, usually text files or R scripts, in a browser.

Last updated 9 months ago

6.17 score 65 stars 3 dependents 51 scripts 954 downloads

cifti - Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files

Functions for the input/output and visualization of medical imaging data in the form of 'CIFTI' files <https://www.nitrc.org/projects/cifti/>.

Last updated 5 years ago

5.76 score 3 stars 96 scripts 236 downloads

matlabr - An Interface for MATLAB using System Calls

Provides users to call MATLAB from using the "system" command. Allows users to submit lines of code or MATLAB m files. This is in comparison to 'R.matlab', which creates a MATLAB server.

Last updated 5 years ago

5.36 score 12 stars 1 dependents 126 scripts 296 downloads

neurohcp - Human 'Connectome' Project Interface

Downloads and reads data from Human 'Connectome' Project <https://db.humanconnectome.org> using Amazon Web Services ('AWS') 'S3' buckets.

Last updated 3 years ago

5.35 score 9 stars 50 scripts 264 downloads

glassdoor - Interface to 'Glassdoor' API

Interacts with the 'Glassdoor' API <https://www.glassdoor.com/developer/index.htm>. Allows the user to search job statistics, employer statistics, and job progression, where 'Glassdoor' provides a breakdown of other jobs a person did after their current one.

Last updated 6 years ago

4.59 score 6 stars 13 scripts 202 downloads

brainR - Helper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging

This includes functions for creating 3D and 4D images using 'WebGL', 'rgl', and 'JavaScript' commands. This package relies on the X toolkit ('XTK', <https://github.com/xtk/X#readme>).

Last updated 4 years ago

4.45 score 11 stars 1 dependents 17 scripts 252 downloads

leanpubr - 'Leanpub' API Interface

Provides access to the 'Leanpub' API <https://leanpub.com/help/api> for gathering information about publications and submissions to the 'Leanpub' platform.

Last updated 6 years ago

3.81 score 13 scripts 220 downloads

stapler - Simultaneous Truth and Performance Level Estimation

An implementation of Simultaneous Truth and Performance Level Estimation (STAPLE) <doi:10.1109/TMI.2004.828354>. This method is used when there are multiple raters for an object, typically an image, and this method fuses these ratings into one rating. It uses an expectation-maximization method to estimate this rating and the individual specificity/sensitivity for each rater.

Last updated 4 years ago

3.70 score 1 stars 8 scripts 173 downloads

mscstts - R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API

R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API, including voice synthesis. A valid account must be registered at the Microsoft Cognitive Services website <https://azure.microsoft.com/services/cognitive-services/> in order to obtain a (free) API key. Without an API key, this package will not work properly.

Last updated 3 years ago

3.68 score 8 stars 12 scripts 257 downloads

gcite - Google Citation Parser

Scrapes Google Citation pages and creates data frames of citations over time.

Last updated 3 years ago

3.67 score 3 stars 31 scripts 330 downloads

kirby21.base - Example Data from the Multi-Modal MRI 'Reproducibility' Resource

Multi-modal magnetic resonance imaging ('MRI') data from the 'Kirby21' 'reproducibility' study <https://www.nitrc.org/projects/multimodal/>, including functional and structural imaging.

Last updated 5 years ago

3.59 score 2 dependents 65 scripts 224 downloads

kirby21.t1 - Example T1 Structural Data from the Multi-Modal MRI 'Reproducibility' Resource

Structural T1 magnetic resonance imaging ('MRI') data from the 'Kirby21' 'reproducibility' study <doi:10.1016/j.neuroimage.2010.11.047>.

Last updated 4 years ago

3.41 score 51 scripts 168 downloads

kirby21.fmri - Example Functional Imaging Data from the Multi-Modal MRI 'Reproducibility' Resource

Functional magnetic resonance imaging ('fMRI') data from the 'Kirby21' 'reproducibility' study <doi:10.1016/j.neuroimage.2010.11.047>.

Last updated 7 years ago

3.30 score 40 scripts 193 downloads

cforward - Forward Selection using Concordance/C-Index

Performs forward model selection, using the C-index/concordance in survival analysis models.

Last updated 4 years ago

2.70 score 2 scripts 720 downloads

stepcount - Estimate Step Counts from 'Accelerometry' Data

Interfaces the 'stepcount' Python module <https://github.com/OxWearables/stepcount> to estimate step counts and other activities from 'accelerometry' data.

Last updated 5 months ago

1.74 score 11 scripts 157 downloads