rscopus - Scopus Database 'API' Interface
Uses Elsevier 'Scopus' API <https://dev.elsevier.com/sc_apis.html> to download information about authors and their citations.
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bibliometricsscopusscopus-api
10.13 score 85 stars 3 dependents 170 scripts 12k downloadsneurobase - 'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects
Base package for 'Neuroconductor', which includes many helper functions that interact with objects of class 'nifti', implemented by package 'oro.nifti', for reading/writing and also other manipulation functions.
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8.56 score 7 stars 5 dependents 578 scripts 794 downloadsfslr - Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')
Wrapper functions that interface with 'FSL' <http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'FSL' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'FSL' command and returns an R object of class 'nifti' if desired.
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fslfslrneuroimagingneuroimaging-analysisneuroimaging-data-science
8.35 score 45 stars 555 scripts 504 downloadsfreesurfer - Wrapper Functions for 'FreeSurfer'
Wrapper functions that interface with 'Freesurfer' <https://surfer.nmr.mgh.harvard.edu/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'Freesurfer' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'Freesurfer' command and returns an R object of class 'nifti' or necessary output.
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8.06 score 10 stars 77 scripts 411 downloadsgifti - Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information
Functions to read in the geometry format under the 'Neuroimaging' 'Informatics' Technology Initiative ('NIfTI'), called 'GIFTI' <https://www.nitrc.org/projects/gifti/>. These files contain surfaces of brain imaging data.
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7.77 score 4 stars 14 dependents 112 scripts 1.6k downloadsWhiteStripe - White Matter Normalization for Magnetic Resonance Images
Shinohara (2014) <doi:10.1016/j.nicl.2014.08.008> introduced 'WhiteStripe', an intensity-based normalization of T1 and T2 images, where normal appearing white matter performs well, but requires segmentation. This method performs white matter mean and standard deviation estimates on data that has been rigidly-registered to the 'MNI' template and uses histogram-based methods.
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6.30 score 9 stars 74 scripts 310 downloadsdiffr - Display Differences Between Two Files using Codediff Library
An R interface to the 'codediff' JavaScript library (a copy of which is included in the package, see <https://github.com/danvk/codediff.js> for information). Allows for visualization of the difference between 2 files, usually text files or R scripts, in a browser.
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6.17 score 67 stars 2 dependents 73 scripts 520 downloadscifti - Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files
Functions for the input/output and visualization of medical imaging data in the form of 'CIFTI' files <https://www.nitrc.org/projects/cifti/>.
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5.83 score 3 stars 112 scripts 516 downloadsmatlabr - An Interface for MATLAB using System Calls
Provides users to call MATLAB from using the "system" command. Allows users to submit lines of code or MATLAB m files. This is in comparison to 'R.matlab', which creates a MATLAB server.
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5.69 score 13 stars 1 dependents 126 scripts 343 downloadsneurohcp - Human 'Connectome' Project Interface
Downloads and reads data from Human 'Connectome' Project <https://balsa.wustl.edu/> using Amazon Web Services ('AWS') 'S3' buckets.
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5.39 score 9 stars 55 scripts 306 downloadsglassdoor - Interface to 'Glassdoor' API
Interacts with the 'Glassdoor' API <https://www.glassdoor.com/developer/index.htm>. Allows the user to search job statistics, employer statistics, and job progression, where 'Glassdoor' provides a breakdown of other jobs a person did after their current one.
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4.75 score 7 stars 16 scripts 561 downloadsactiread - Baseline Package for Reading Actigraphy and Activity Data
Provides baseline functions for reading actigraphy and activity data, relying on baseline functions from 'actibase'. Reads data from 'Axivity' 'CWA' <https://axivity.com/> , ActiGraph 'GT3X' <https://ametris.com/actigraph-wgt3x-bt>, 'SensorLog' <https://sensorlog.berndthomas.net/>, and 'SensorLogger' <https://www.tszheichoi.com/sensorlogger> zipped CSV files.
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4.72 score 13 scripts 150 downloadsbrainR - Helper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging
This includes functions for creating 3D and 4D images using 'WebGL', 'rgl', and 'JavaScript' commands. This package relies on the X toolkit ('XTK', <https://github.com/xtk/X#readme>).
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4.65 score 12 stars 1 dependents 25 scripts 429 downloadsactibase - Baseline Functions for Actigraphy and Activity Processing and Analysis
Provides baseline functions for actigraphy and activity data. This package is intended to be extended by downstream overlays such as 'actiread', 'actimetrics', and 'stepcount'.
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4.00 score 1 dependents 11 scripts 493 downloadsstapler - Simultaneous Truth and Performance Level Estimation
An implementation of Simultaneous Truth and Performance Level Estimation (STAPLE) <doi:10.1109/TMI.2004.828354>. This method is used when there are multiple raters for an object, typically an image, and this method fuses these ratings into one rating. It uses an expectation-maximization method to estimate this rating and the individual specificity/sensitivity for each rater.
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3.78 score 1 stars 12 scripts 297 downloadsgcite - Google Citation Parser
Scrapes Google Citation pages and creates data frames of citations over time.
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3.76 score 3 stars 38 scripts 243 downloadsmscstts - R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API
R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API, including voice synthesis. A valid account must be registered at the Microsoft Cognitive Services website <https://azure.microsoft.com/en-us/products/ai-services/> in order to obtain a (free) API key. Without an API key, this package will not work properly.
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3.72 score 8 stars 13 scripts 266 downloadskirby21.base - Example Data from the Multi-Modal MRI 'Reproducibility' Resource
Multi-modal magnetic resonance imaging ('MRI') data from the 'Kirby21' 'reproducibility' study <https://www.nitrc.org/projects/multimodal/>, including functional and structural imaging.
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3.58 score 2 dependents 64 scripts 231 downloadscforward - Forward Selection using Concordance/C-Index
Performs forward model selection, using the C-index/concordance in survival analysis models.
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2.70 score 3 scripts 290 downloads